Search NCBI databases (2024)

Literature

PubMed

PubMed® comprises more than 37 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full text content from PubMed Central and publisher web sites.

Featured Bookshelf titles

Characteristics of Existing Asthma Self-Management Education Packages

Leas BF, Tipton K, Bryant-Stephens T, et al.

LiverTox

Clinical and Research Information on Drug-Induced Liver Injury

Browse the Bookshelf

Literature databases

Bookshelf

Books and reports

MeSH

Ontology used for PubMed indexing

NLM Catalog

Books, journals and more in the NLM Collections

PubMed

Scientific and medical abstracts/citations

PubMed Central

Full-text journal articles

Data

Genes

Gene sequences and annotations used as references for the study of orthologs structure, expression, and evolution

Gene

Collected information about gene loci

GEO DataSets

Functional genomics studies

GEO Profiles

Gene expression and molecular abundance profiles

PopSet

Sequence sets from phylogenetic and population studies

Proteins

Protein sequences, 3-D structures, and tools for the study of functional protein domains and active sites

Conserved Domains

Conserved protein domains

Identical Protein Groups

Protein sequences grouped by identity

Protein

Protein sequences

Protein Family Models

Models representing hom*ologous proteins with a common function

Structure

Experimentally-determined biomolecular structures

BLAST

A tool to find regions of similarity between biological sequences

blastn

Search nucleotide sequence databases

blastp

Search protein sequence databases

blastx

Search protein databases using a translated nucleotide query

tblastn

Search translated nucleotide databases using a protein query

Primer-BLAST

Find primers specific to your PCR template

Genomes

Genome sequence assemblies, large-scale functional genomics data, and source biological samples

Assembly

Genome assembly information

BioCollections

Museum, herbaria, and other biorepository collections

BioProject

Biological projects providing data to NCBI

BioSample

Descriptions of biological source materials

Genome

Genome sequencing projects by organism

Nucleotide

DNA and RNA sequences

SRA

High-throughput sequence reads

Taxonomy

Taxonomic classification and nomenclature

Clinical

Heritable DNA variations, associations with human pathologies, and clinical diagnostics and treatments

ClinicalTrials.gov

Privately and publicly funded clinical studies conducted around the world

ClinVar

Human variations of clinical significance

dbGaP

Genotype/phenotype interaction studies

dbSNP

Short genetic variations

dbVar

Genome structural variation studies

GTR

Genetic testing registry

MedGen

Medical genetics literature and links

OMIM

Online mendelian inheritance in man

PubChem

Repository of chemical information, molecular pathways, and tools for bioactivity screening

BioAssays

Bioactivity screening studies

Compounds

Chemical information with structures, information and links

Pathways

Molecular pathways with links to genes, proteins and chemicals

Substances

Deposited substance and chemical information

News

Research news

NPR News JULY 14, 2024

8 things to know about the drug known as 'gas station heroin'

Bill Chappell

For decades, tianeptine was used to treat depression, even though no one knew how it worked. But it turns out it's a type of opioid, and the U.S. is facing a spike in abuse of "gas station heroin."

The Scientist JULY 10, 2024

Deleting a MicroRNA Cluster Reversed Biological Sex in Mice

Removing microRNA that caused conversion of male mice embryos into female sheds light on key noncoding elements in sex determination.

NPR News JULY 10, 2024

These monkeys were 'notoriously competitive' until Hurricane Maria wrecked their home

Ari Daniel

Rhesus macaques on Cayo Santiago are known for being intolerant, hierarchical and aggressive. After 2017's Hurricane Maria destroyed their home, the monkeys' society underwent surprising changes.

More news

Recent blog posts

NCBI Insights JULY 16, 2024

NIH Genetic Testing Registry (GTR®) Annual Review Process Ensures High-quality Data

Do you rely on high-quality and up-to-date genetic test information from the NIH Genetic Testing Registry (GTR)? Laboratories are expected to regularly review their tests, lab contacts, and license data for accuracy. GTR is making the annual review process for submitters easier and more intuitive to ensure we provide you the most current information. Attention … Continue reading NIH Genetic Testing Registry (GTR®) Annual Review Process Ensures High-quality Data →

NCBI Insights JULY 15, 2024

RefSeq Release 225 Now Available!

Check out RefSeq release 225, now available onlineand from theFTPsite. You can access RefSeq data throughNCBI Datasets. What’s included in this release? As of July 8, 2024, this full release incorporates genomic, transcript, and protein data containing: 448,507,905 records 334,845,613 proteins 63,542,774 RNAs Sequences from 152,668 organisms The release is provided in several directories as … Continue reading RefSeq Release 225 Now Available! →

NIH Director's Blog JULY 11, 2024

Sequencing Technique Detects Earliest Signs of Genetic Mutations Underlying Cancer, Aging, and More

Every day, billions of cells in your body divide, each producing two daughter cells. It’s an essential process for your tissues and organs to renew themselves and remain healthy. To do it, cells must first duplicate their DNA to ensure that each daughter cell gets an accurate copy. In this process, mistakes are inevitably made. Most DNA errors are accurately fixed and do not lead to mutations. But when small errors akin to single-letter typos aren’t corrected, they can become permanent in a cell and multiplied with each subsequent cell division. Even cells that don’t divide, such as neurons in your brain, acquire damage and mutations in their DNA with age. As a result, your tissues contain collections of cells with distinct mutations that accumulate over time.While many of these small errors will show no obvious consequences, others can lead to cancer and other health conditions. Now, a new DNA sequencing technique, described in Nature and developed through research supported by NIH, promises to detect early DNA changes before they become permanent mutations in a cell’s genome. The method, called Hairpin Duplex Enhanced Fidelity Sequencing (HiDEF-seq), could advance our understanding of how and why mutations arise, with potentially important implications for our health. For example, the ability to identify signs that precede mutations may help predict a person’s health risks based on genetic predispositions, environmental exposures, or other factors.

Search NCBI databases (2024)

FAQs

What is the search engine of NCBI? ›

Entrez. The Entrez Global Query Cross-Database Search System is used at NCBI for all the major databases such as Nucleotide and Protein Sequences, Protein Structures, PubMed, Taxonomy, Complete Genomes, OMIM, and several others.

What are the major databases of NCBI? ›

NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Splign, RefSeq, UniGene, hom*oloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the ...

How do I search a database? ›

Database search strategies
  1. Step 1: Write your topic out in sentence or question form. ...
  2. Step 2: Break your topic sentence up into main ideas or keywords. ...
  3. Step 3: Think of synonyms or alternate words to describe each concept. ...
  4. Step 4: Add "Boolean operators" (AND, OR) to make a complete search statement.
Jun 1, 2024

How do I get a list of databases? ›

Run the following query to show list of databases: SHOW DATABASES; You can run this statement from MySQL Command Line Client, MySQL Shell, as well as from any GUI tool that supports SQL—for example, dbForge Studio for MySQL. MySQL returns the results in a table with one column—Database.

What is the search and retrieval tool of NCBI? ›

The Entrez retrieval system uses an intuitive user interface for rapidly searching sequence and bibliographic data. A unique feature of the system is its use of precomputed similarity searches for each record to create links to "neighbors" or related records in other Entrez databases.

How to search PubMed database? ›

How do I search PubMed?
  1. Identify the key concepts for your search.
  2. Enter the terms (or key concepts) in the search box.
  3. Press the Enter key or click Search.
May 21, 2024

How do I access advanced search? ›

On your computer, go to Advanced Search: google.com/advanced_search. Under “Find pages with,” choose the query field/s to: Include exact words or a list of words in your results.

Is NCBI a database or website? ›

The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals.

What is the best search engine for research? ›

Google Scholar is the clear number one when it comes to academic search engines. It's the power of Google searches applied to research papers and patents.

How credible is NCBI? ›

The National Center for Biotechnology Information (NCBI) is a reputable and reliable resource that provides access to a wide range of scientific studies, research articles, and biomedical information.

What does NCBI stand for? ›

National Center for Biotechnology Information.

Is NCBI different from PubMed? ›

Available to the public online since 1996, PubMed was developed and is maintained by the National Center for Biotechnology Information (NCBI), at the U.S. National Library of Medicine (NLM), located at the National Institutes of Health (NIH).

How do you search an Access database? ›

Open the table or form, and then click the field that you want to search. On the Home tab, in the Find group, click Find. The Find and Replace dialog box appears, with the Find tab selected. In the Find What box, type the value for which you want to search.

How to do a database search on PubMed? ›

How do I search PubMed?
  1. Identify the key concepts for your search.
  2. Enter the terms (or key concepts) in the search box.
  3. Press the Enter key or click Search.
May 21, 2024

How do I search for books on NCBI? ›

How do I search the books at NCBI? The complete Bookshelf can be searched by typing a query into the search box on the Bookshelf homepage. Go to the the Bookshelf homepage.

How do I search a database in Google Scholar? ›

Tips for searching Google Scholar
  1. Use quotes to search for an exact match.
  2. Add the year to the search phrase to get articles published in a particular year.
  3. Use the side bar controls to adjust your search result.
  4. Use Boolean operator to better control your searches.

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